Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs117424193 chr8:8591377 T/C 3.88E-5 184 13.37 13.67 4.97 KM Plot
ESCA rs117461525 chr16:1500501 C/T 2.36E-7 182 13.33 14.5 4 KM Plot
ESCA rs11766127 chr7:47979552 G/A 1.13E-5 180 13.37 13.1 1.53 KM Plot
ESCA rs11777742 chr8:8589858 C/T 3.88E-5 184 13.37 13.67 4.97 KM Plot
ESCA rs11777908 chr8:8590437 C/T 3.88E-5 184 13.37 13.67 4.97 KM Plot
ESCA rs11780824 chr8:8593498 C/T 3.88E-5 184 13.37 13.67 4.97 KM Plot
ESCA rs11781065 chr8:41300955 A/G 1.2E-7 182 13.02 20 2.7 KM Plot
ESCA rs11781258 chr8:8589758 A/G 3.03E-5 181 13.4 14.68 4.97 KM Plot
ESCA rs11783944 chr8:8597801 A/G 9.36E-6 177 13.37 13.67 4.37 KM Plot
ESCA rs11786023 chr8:41308617 G/A 1.41E-7 183 12.93 18.53 2.7 KM Plot
ESCA rs11809456 chr1:112269139 A/G 1.86E-6 177 13.35 7.87 3.92 KM Plot
ESCA rs11854168 chr15:65596967 T/C 7.1E-5 181 12.85 16.53 4.08 KM Plot
ESCA rs11857446 chr15:65597199 C/T 6.28E-5 182 12.87 16.53 4.08 KM Plot
ESCA rs11949436 chr5:20940025 A/G 7.08E-7 184 13.35 12.33 2.7 KM Plot
ESCA rs11950027 chr5:20950424 T/C 7.08E-7 184 13.35 12.33 2.7 KM Plot